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Recent publications are available for download either in Adobe (.pdf) ZIPped format (follow the links); others can be sent on request. If you have problems to download files, please contact me.
Last update: 19-mar-2010 15:12 |
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Journal papers:
Lopes, H.S., Erig Lima, C.R., Moritz, G.L., A parallel algorithm for large-scale multiple sequence alignment. Computing and Informatics, v. ?, n. ?, p. ?-?, 2010. ISSN: 1335-9150 [accepted]
Silva, R.R., Erig
Lima, C.R.E., Lopes, H.S., Template matching in digital images using a
compact genetic algorithm with elitism and mutation.
Journal of Circuits,
Systems and Computers, v. 19, n.
1, p. 91-106, 2010.
Kalegari, D.H., Lopes, H.S. A differential evolution approach for protein structure optimization in a 2-D off-lattice protein model, International Journal of Bio-inspired Computation, v. 2, n. ?, p. ?-?, 2010. ISSN (Print): 1758-0366 [accepted]
Weinert, W.R.,
Lopes, H.S. Evaluation of dynamic behavior forecasting parameters in the
process of transition rule induction of unidimensional cellular automata.
Biosystems, v.
99, n, 1, p. 6-16, 2010. ISSN: 0303-2647
Ferlin, E.P., Lopes, H.S., Erig Lima, C.R., Perretto, M. PRADA: a high-performance reconfigurable parallel architecture based on the dataflow model. International Journal of High-Perfomance Systems Architecture, v. ?, n. ?, p. ?-?, 2010. ISSN: 1751-6536 [accepted]
Benítez, C.M., Lopes, H.S. Protein structure prediction with the 3D-HP side-chain model using a master-slave parallel genetic algorithm. Journal of the Brazilian Computer Society, v. ?, n. ?, p. ?-?, 2010. ISSN: 0104-6500 [accepted]
Castilho-Weinert, L.V., Lopes, H.S. Sistema de apoio ao diagnóstico em fisioterapia neuropediátrica. Fisioterapia Ser, v. 1, n. 5, p. ?-?, 2010
Lecture Notes in Computer Science:
Book Chapters:
Castilho, L.V., Lopes, H.S. An Ontology-based System for Knowledge Management and Learning in Neuropediatric Physiotherapy. In: Szczerbicki, E., Nguyen, N.T. (Eds.), Smart Information and Knowledge Management, Studies in Computational Intelligence Series, vol. 260, Springer-Verlag, p. ?-?, 2010. ISBN: 978-3-642-04583-7
Conferences:
Hembecker, F., Lopes, H.S., A molecular model for representing protein structures and its application to protein folding. Proceedings of 4th International Conference on Bioinformatics and Biomedical Engineering, Chengdu, China, 18-20/june, p. ??-??, 2010.
Journal papers:
Castilho-Weinert, L.V., Lopes, H.S., Computers in physical therapy education: interactive multimedia learning with MuStreT. Informatics in Education, v. 8, n. 2, p. 157-172, 2009. ISSN: 1648-5831
Lecture Notes in Computer Science:
Tsunoda, D.F., Lopes, H.S., Freitas, A.A. A hybrid evolutionary approach for the protein classification problem. In: N.T Nguyen, R. Kowalczyk, S-M. Chen (Eds.) Computational Collective Intelligence, Proc. ICCCI/ NICI´2009, Lecture Notes in Artificial Intelligence, v. 5796, p 629-640, 2009.
Book Chapters:
Conferences:
Benitez, C.M., Lopes, H.S., A parallel genetic algorithm for protein folding prediction using the 3DHP side-chain model. Proceedings of IEEE Congress on Evolutionary Computation (CEC), Trondheim, Norway, 18-21/may, p. 1297-1304, 2009, ISBN: 978-1-4244-2959-2
Selow, R. Lopes, H.S., Lima, C.R.E. A comparison of FPGA and FPAA technologies for a signal processing application. Proc. 19th International Conference on Field Programmable Logic and Applications (FPL), Praha, Czech Republic, 31/ago-02/set, p. ?-?, 2009
Tsunoda, D.F., Freitas, A.A., Lopes, H.S., MAHATMA: A Genetic Programming-Based Tool for Protein Classification. Proc. International Conference on Intelligent Systems Design and Applications Conference (ISDA), Pisa, Italy, 30/nov-02/dez, p. ??-??, 2009
Chidambaram, C., Lopes, H.S., A new approach for template matching in digital images using an artificial bee colony algorithm. In: Proc. World Congress on Nature and Biologically Inspired Computing, Coimbatore (NABIC), India, 09-11/12, p. ??-??, 2009.
Tavares, L.G., Lopes, H.S., Erig Lima, C.R., Construction and improvement heuristics applied to the capacitated vehicle routing problem. In: Proc. World Congress on Nature and Biologically Inspired Computing, Coimbatore (NABIC), India, 09-11/12, p. ??-??, 2009.
Tavares, L.G., Lopes, H.S., Erig Lima, C.R., A study of topology in insular parallel genetic algorithms. In: Proc. World Congress on Nature and Biologically Inspired Computing, Coimbatore (NABIC), India, 09-11/12, p. ??-??, 2009.
Tavares, L.G., Lopes, H.S., Erig Lima, C.R., Evaluation of weight matrix models in the splice junction recognition problem. In: Proc. IEEE International Conference on Bioinformatics & Biomedicine (BIBM), Washington, USA, 01-04/11, p. ??-??, 2009.
Benítez, C.V., Lopes, H.S.,
Algoritmo genético
aplicado à predição da estrutura de proteínas utilizando o modelo 3D-HP Side
Chain. Anais do VII Encontro Nacional de Inteligência Artificial (ENIA), Bento
Gonçalves, RS, p. 717-726, 2009
Journal papers:
Falcone, M.A., Lopes, H.S., Coelho, L.S. Supply chain optimization using evolutionary algorithms. International Journal of Computer Applications in Technology, v. 31, n. 3/4, p. 158-167, 2008. ISSN: 1741-5047
Lecture Notes in Computer Science:
Perlin, H.A. ; Lopes, H. S. ; Mezzadri, T.C. Particle swarm optimization for object recognition in computer vision. Lecture Notes in Computer Science, v. 5027, p. 11-21, 2008
Tavares, L.G., Lopes, H.S., Erig Lima, C.R. A Comparative study of machine learning methods for detecting promoters in bacterial DNA sequences. Lecture Notes in Artificial Intelligence, v. 5227, p. 959-966, 2008.
Silva, R.R., Lopes, H.S., Erig Lima, C.R., A compact genetic algorithm with elitism and mutation applied to image recognition. Lecture Notes in Artificial Intelligence, v. 5227, p. 1109-1116, 2008.
Book Chapters:
Rodrigues, E.M.L., Lopes, H.S. Evolutionary Grammatical Inference. In:. Rabuñal, J.R., Dorado, J., Pazos, A. (Eds.) Encyclopedia of Artificial Intelligence. Herschey, USA: Information Science Reference, p. 596-602, 2008. ISBN: 978-1-59904-849-9.
Freitas, A.A., Parpinelli, R.S., Lopes, H.S., Ant Colony Algorithms for Data Classification. In: Khosrow-Pour, M (Ed.), Encyclopedia of Information Science and Technology, 2nd Edition. Hershey: IGI Publishing , p. 420-424, 2005. ISBN: 978-1-60566-026-4.
Lopes, H.S. Evolutionary algorithms for the protein folding problem: a review and current trends. In: Smolinski, T.G., Milanova, M.M., Hassanien, A-E. (Eds.), Applications of Computational Intelligence in Bioinformatics and Biomedicine: Current Trends and Open Problems. Heidelberg: Springer-Verlag,v. I, p. 297-315, 2008.
Selow, R., Neves Junior, F., Lopes, H.S. Genetic algorithms and heuristic rules for solving the nesting problem in the package industry. In: Oscar Castillo, Li Xu, Sio-Long. Ao (Eds.), Trends in Intelligent Systems and Computer Engineering. Heidelberg: Springer-Verlag, p. 189-208, 2008. ISBN: 978-0-387-74934-1
Conferences:
Castilho, L.V., Lopes, H.S., Tacla, C.A. Modelling and contruction of an ontology for Neuropediatric Physiotherapy domain. In: Proceedings of 8th International Conference on Hybrid Intelligent Systems, Barcelona (Spain), 10-12/september, IEEE Press, p. 210-215, 2008.
Castilho, L.V.,
Lopes, H.S., Weinert, W.R.
TFM: um sistema multimídia de apoio ao aprendizado
de testes de força muscular em Fisioterapia. In: Anais do XXVIII
Congresso da SBC - Workshop em Informática Médica, Belém (PA),
12-18/julho, p. 101-110, 2008.
Yabcznski, E., Wille, E.C.G.,
Lopes, H.S. Algoritmos para solução do problema de
atribuição de capacidades discretas em redes TCP/IP. In: Anais
do XXVI Simpósio Brasileiro de Telecomunicações, Rio de Janeiro
(RJ), 05-05/setembro, p. ??-??, 2008.
Fabro, J., Lopes, H.S., Arruda, L.V.R.
Autonomous robot navigation on a
fuzzy mapped environment through neural networks, with evolutionary path
planning. Proceedings of RoboControl Workshop, Bauru, SP, [s.p.], 2008.
Lima, C.R.E., Lopes, H.S., Silva, R.R. Embedded FPGA architecture for an
educational mobile robot platform. Proceedings of RoboControl Workshop,
Bauru, SP, [s.p.], 2008.
Journal papers:
Perretto, M., Lopes, H.S. An ant colony system for large-scale phylogenetic tree reconstruction. Journal of Intelligent and Fuzzy Systems, v. 18, n. 6, p.575-583, 2007. ISBN: 1064-1246
Kugler, M., Lopes, H.S. A Configware Approach for the Implementation of a LVQ Neural Network. International Journal of Computational Intelligence Research, v. 3, n. 1, p. 21-25, 2006 ISSN: 1568-4946
Lopes, H.S., Lima, C.R.E., Murata, N.J. A configware approach for high-speed parallel analysis of genomic data. Journal of Circuits, Systems, and Computers, v. 16, n. 4, p. 1-15, 2007.
Lopes,
H.S. Genetic programming for
epileptic pattern recognition in electroencephalographic signals.
Applied
Soft Computing, v. 7, p. 343-352, 2007 ISSN: 1568-4946
Lopes, H. S. ; Bitello, R. . A differential evolution approach for protein folding using a lattice model. Journal of Computer Science and Technology (Beijing), v. 22, n. 6, p. 904-908, 2007. ISSN: 1000-9000
Bobel, E., Lopes,
H.S. Inteligência computacional
aplicada à logística de equipes de manutenção de redes de distribuição de
energia elétrica.
Espaço Energia, v. 7, p. 22-33,
2007. ISSN: 1807-8575.
Lecture Notes in Computer Science:
Hembecker, F., Lopes,
H.S., Godoy Jr., W., Particle Swarm Optimization for the Multidimensional
Knapsack Problem. Lecture Notes in Computer Science, v. 4331, p.
358-365, 2007.
Silva, R.S., Lopes,
H.S., Lima, C.R.E., A New Mutation Operator for the Elitism-based Compact
Genetic Algorithm. Lecture Notes in Computer Science, v. 4331, p.
159-166, 2007.
Lima, C.R.E., Lopes,
H.S., Moroz, M.R., Meneses, R.M., Multiple sequence alignment using
reconfigurable computing. Lecture Notes in Computer Science, v. 4419, p.
379-384, 2007.
Armstrong Jr., N.B.,
Lopes, H.S., Lima, C.R.E., Reconfigurable computing for accelerating protein
folding simulations. Lecture Notes in Computer Science, v. 4419, p. 314-325,
2007.
Weinert, W.R.,
Benitez, C., Lopes, H.S., Lima, C.R.E.,
Simulation of the dynamic behavior
of one-dimensional cellular automata using reconfigurable computing.
Lecture Notes in Computer Science v. 4419, p. 385-390, 2007.
Ferlin, E.P. ; Lopes,
H. S. ; Lima, C.R.E. ; Chichaczewski, E. .
Reconfigurable parallel
architecture for genetic algorithms: application to the synthesis of digital
circuits. Lecture Notes in Computer Science, v. 4419, p. 326-336,
2007.
Book Chapters:
Scapin, M.P., Lopes, H.S. A hybrid genetic algorithm for the protein folding problem using the 2D-HP lattice model. In: Ang Yang, Yin Shan, Lam Thu Bui. (Org.). Success in Evolutionary Computation. Heidelberg: Springer-Verlag, 2007, v. , p. 205-224. ISBN:
Freitas, A.A., Parpinelli, R.S., Lopes, H.S., Ant Colony Algorithms for Data Classification. In: Khosrow-Pour, M (Ed.), Encyclopedia of Information Science and Technology, 2nd Edition. Hershey: IGI Publishing , p. 420-424, 2007. ISBN:
Conferences:
Selow, R., Neves, F., Lopes, H.S., Genetic algorithms for the nesting problem in the packing industry. In: Proceedings of International Multiconference of Engineers and Computer Scientists. Hong Kong, 21-23/03, p. ?-?, 2007.
Barros, A.M., Lopes, H.S., Stelle,
A.L.,Automatic
FIR Filter Design Method and Tool based on Genetic Algorithms. In:
Proceedings of 1st IEEE Symposium on Computational Intelligence in Image
and Signal Processing. Honolulu, USA, 01-05/04, p. 151-156, 2007.
Rodrigues, E.L.M, Lopes, H. S., Genetic Programming for Induction of Context-free Grammars. In: ISDA, 2007, Rio de Janeiro. Proceedings of 7th International Conference on Intelligent Systems Design and Applications. Piscataway, NJ : IEEE Computer Society Press, 2007.
Lima,
C.R.E.,Rocha, L.B., Lopes, H.S.,
Um ambiente para apoio ao
aprendizado de automação e controle e sua aplicabilidade no
desenvolvimento de competências e habilidades. In: XXXV
Congresso Brasileiro de Educação em Engenharia, 2007, Curitiba.
Anais do XXXV COBENGE, p. IB9-1-1B9-15 2007.
Weinert,
W.R., Lopes H. S., Análise de estratégias para melhoria do
desempenho do algoritmo de programação por expressão genética na
tarefa de regressão simbólica. In: Anais do I Simpósio Brasileiro de
Inteligência Computacional, 2007, Florianópolis, [CD-ROM], 2007
Lopes,
H. S., Dalle Molle, V.L., Lima, C.R.E.
Aplicação da otimização
por colônia de formigas ao problema de roteamento de múltiplos
veículos de capacidade limitada. In: Anais do I Simpósio Brasileiro de
Inteligência Computacional, 2007, Florianópolis, [CD-ROM], 2007
Tavares, L., Lima, C.R.E., Lopes, H.S.,
Estudo comparativo de
métodos de aprendizagem de máquina na detecção de regiões
promotoras de genes de Escherichia coli. In: Anais do I Simpósio Brasileiro de
Inteligência Computacional, 2007, Florianópolis, [CD-ROM], 2007
Rodrigues,
E.L.M., Lopes, H.S. Inferência de gramáticas livres de contexto
usando programação genética. In: Anais do I Simpósio Brasileiro de
Inteligência Computacional, 2007, Florianópolis, [CD-ROM], 2007.
Hembecker,
F., Oliveira, D.R., Lopes, H.S.
Otimização por enxame de
partículas com extinção em massa: uma abordagem aplicada ao
problema multidimensional da mochila. In: Anais do I Simpósio Brasileiro de
Inteligência Computacional, 2007, Florianópolis, [CD-ROM], 2007
Journal papers:
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